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asa analytical software  (SourceForge net)

 
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    Structured Review

    SourceForge net asa analytical software
    Flowchart of the functioning of the <t>program</t> <t>SBION2.</t> Upon start of the program it screens out NMR files if they are there in the working directory followed by making a list of X-ray structure files. The program verify for accessibility calculation program <t>(ASA)</t> in specified directory. If absent (i.e. NO), the program obtains atomic salt bridge pairs (step-1) and then converts them in residue specific salt bridge pairs (step-2). At this level four outputs are redirected (O-1). Output details of isolated (O-2) and networked salt-bridges (O-3) are separately reported (STEPs 3 to 6). A supplementary table (O-4) is prepared which includes both isolated and networked salt-bridge information (STEPs 5 and 6). If ASA (STEP 7) is YES, SBION2 performs step 1 through 6 that include core and surface location information of salt bridges along with earlier ones. Freq: Frequency; SMFS: Single bond multiplicity frequency and sum; MMF: Multiple bond multiplicity frequency; MMS: Multiple bond multiplicity sum; HB_SB: Hydrogen bonded salt-bridge frequency; non_HB: non-Hydrogen bonded salt-bridge frequency; SSD_SB: secondary structure (helix, sheet and coil) distribution of salt-bridge; L_SB: local salt-bridges; non_L: non-local salt bridges; II:_HSCI: intra- and interhelix, sheet and coil interactions; int_T: intervening residue table.
    Asa Analytical Software, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/asa analytical software/product/SourceForge net
    Average 90 stars, based on 1 article reviews
    asa analytical software - by Bioz Stars, 2026-05
    90/100 stars

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    1) Product Images from "SBION2: Analyses of Salt Bridges from Multiple Structure Files, Version 2"

    Article Title: SBION2: Analyses of Salt Bridges from Multiple Structure Files, Version 2

    Journal: Bioinformation

    doi: 10.6026/97320630011039

    Flowchart of the functioning of the program SBION2. Upon start of the program it screens out NMR files if they are there in the working directory followed by making a list of X-ray structure files. The program verify for accessibility calculation program (ASA) in specified directory. If absent (i.e. NO), the program obtains atomic salt bridge pairs (step-1) and then converts them in residue specific salt bridge pairs (step-2). At this level four outputs are redirected (O-1). Output details of isolated (O-2) and networked salt-bridges (O-3) are separately reported (STEPs 3 to 6). A supplementary table (O-4) is prepared which includes both isolated and networked salt-bridge information (STEPs 5 and 6). If ASA (STEP 7) is YES, SBION2 performs step 1 through 6 that include core and surface location information of salt bridges along with earlier ones. Freq: Frequency; SMFS: Single bond multiplicity frequency and sum; MMF: Multiple bond multiplicity frequency; MMS: Multiple bond multiplicity sum; HB_SB: Hydrogen bonded salt-bridge frequency; non_HB: non-Hydrogen bonded salt-bridge frequency; SSD_SB: secondary structure (helix, sheet and coil) distribution of salt-bridge; L_SB: local salt-bridges; non_L: non-local salt bridges; II:_HSCI: intra- and interhelix, sheet and coil interactions; int_T: intervening residue table.
    Figure Legend Snippet: Flowchart of the functioning of the program SBION2. Upon start of the program it screens out NMR files if they are there in the working directory followed by making a list of X-ray structure files. The program verify for accessibility calculation program (ASA) in specified directory. If absent (i.e. NO), the program obtains atomic salt bridge pairs (step-1) and then converts them in residue specific salt bridge pairs (step-2). At this level four outputs are redirected (O-1). Output details of isolated (O-2) and networked salt-bridges (O-3) are separately reported (STEPs 3 to 6). A supplementary table (O-4) is prepared which includes both isolated and networked salt-bridge information (STEPs 5 and 6). If ASA (STEP 7) is YES, SBION2 performs step 1 through 6 that include core and surface location information of salt bridges along with earlier ones. Freq: Frequency; SMFS: Single bond multiplicity frequency and sum; MMF: Multiple bond multiplicity frequency; MMS: Multiple bond multiplicity sum; HB_SB: Hydrogen bonded salt-bridge frequency; non_HB: non-Hydrogen bonded salt-bridge frequency; SSD_SB: secondary structure (helix, sheet and coil) distribution of salt-bridge; L_SB: local salt-bridges; non_L: non-local salt bridges; II:_HSCI: intra- and interhelix, sheet and coil interactions; int_T: intervening residue table.

    Techniques Used: Residue, Isolation



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    asa analytical software  (SourceForge net)
    90
    SourceForge net asa analytical software
    Flowchart of the functioning of the <t>program</t> <t>SBION2.</t> Upon start of the program it screens out NMR files if they are there in the working directory followed by making a list of X-ray structure files. The program verify for accessibility calculation program <t>(ASA)</t> in specified directory. If absent (i.e. NO), the program obtains atomic salt bridge pairs (step-1) and then converts them in residue specific salt bridge pairs (step-2). At this level four outputs are redirected (O-1). Output details of isolated (O-2) and networked salt-bridges (O-3) are separately reported (STEPs 3 to 6). A supplementary table (O-4) is prepared which includes both isolated and networked salt-bridge information (STEPs 5 and 6). If ASA (STEP 7) is YES, SBION2 performs step 1 through 6 that include core and surface location information of salt bridges along with earlier ones. Freq: Frequency; SMFS: Single bond multiplicity frequency and sum; MMF: Multiple bond multiplicity frequency; MMS: Multiple bond multiplicity sum; HB_SB: Hydrogen bonded salt-bridge frequency; non_HB: non-Hydrogen bonded salt-bridge frequency; SSD_SB: secondary structure (helix, sheet and coil) distribution of salt-bridge; L_SB: local salt-bridges; non_L: non-local salt bridges; II:_HSCI: intra- and interhelix, sheet and coil interactions; int_T: intervening residue table.
    Asa Analytical Software, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/asa analytical software/product/SourceForge net
    Average 90 stars, based on 1 article reviews
    asa analytical software - by Bioz Stars, 2026-05
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    Flowchart of the functioning of the program SBION2. Upon start of the program it screens out NMR files if they are there in the working directory followed by making a list of X-ray structure files. The program verify for accessibility calculation program (ASA) in specified directory. If absent (i.e. NO), the program obtains atomic salt bridge pairs (step-1) and then converts them in residue specific salt bridge pairs (step-2). At this level four outputs are redirected (O-1). Output details of isolated (O-2) and networked salt-bridges (O-3) are separately reported (STEPs 3 to 6). A supplementary table (O-4) is prepared which includes both isolated and networked salt-bridge information (STEPs 5 and 6). If ASA (STEP 7) is YES, SBION2 performs step 1 through 6 that include core and surface location information of salt bridges along with earlier ones. Freq: Frequency; SMFS: Single bond multiplicity frequency and sum; MMF: Multiple bond multiplicity frequency; MMS: Multiple bond multiplicity sum; HB_SB: Hydrogen bonded salt-bridge frequency; non_HB: non-Hydrogen bonded salt-bridge frequency; SSD_SB: secondary structure (helix, sheet and coil) distribution of salt-bridge; L_SB: local salt-bridges; non_L: non-local salt bridges; II:_HSCI: intra- and interhelix, sheet and coil interactions; int_T: intervening residue table.

    Journal: Bioinformation

    Article Title: SBION2: Analyses of Salt Bridges from Multiple Structure Files, Version 2

    doi: 10.6026/97320630011039

    Figure Lengend Snippet: Flowchart of the functioning of the program SBION2. Upon start of the program it screens out NMR files if they are there in the working directory followed by making a list of X-ray structure files. The program verify for accessibility calculation program (ASA) in specified directory. If absent (i.e. NO), the program obtains atomic salt bridge pairs (step-1) and then converts them in residue specific salt bridge pairs (step-2). At this level four outputs are redirected (O-1). Output details of isolated (O-2) and networked salt-bridges (O-3) are separately reported (STEPs 3 to 6). A supplementary table (O-4) is prepared which includes both isolated and networked salt-bridge information (STEPs 5 and 6). If ASA (STEP 7) is YES, SBION2 performs step 1 through 6 that include core and surface location information of salt bridges along with earlier ones. Freq: Frequency; SMFS: Single bond multiplicity frequency and sum; MMF: Multiple bond multiplicity frequency; MMS: Multiple bond multiplicity sum; HB_SB: Hydrogen bonded salt-bridge frequency; non_HB: non-Hydrogen bonded salt-bridge frequency; SSD_SB: secondary structure (helix, sheet and coil) distribution of salt-bridge; L_SB: local salt-bridges; non_L: non-local salt bridges; II:_HSCI: intra- and interhelix, sheet and coil interactions; int_T: intervening residue table.

    Article Snippet: If the program is called with option 1 or 2, upon listing of PDB files it checks for existence of ASA analytical software in the local machine in specified directory ( http:// sourceforge.net /projects/sbion2/ files/ README.txt/ download ) for extraction of surface and core location of salt bridges along with others (see below).

    Techniques: Residue, Isolation